Physics Research

Yesim Darici, Ph.D.

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PUBLICATIONS IN PHYSICS

• “Characterization of molecular mechanism of neuroglobin binding to cytochrome c: A surface plasmon resonance and isothermal titration calorimetry study” Purushottam Babu Tiwari, Luisana Astudillo, Khoa Pham, Xuewen Wang, Jin He, Sophie Bernad, Valérie Derrien, Pierre Sebban, Jaroslava Miksovska, Yesim Darici, Inorganic Chemistry Communications, Volume 62, , Pages 37-41, December 2015
• “Note: Model identification and analysis of bivalent analyte surface plasmon resonance data”, Purushottam Babu Tiwari, Aykut Üren, Jin He, Yesim Darici, and Xuewen Wang, Review of Scientific Instrument, 86, 106107 (2015)
• “Analyzing Surface Plasmon resonance data: Choosing a correct biphasic model for interpretation”, Purushottam Tiwari, Xuewen Wang, Jin he, and Yesim Darici, Review of Scientific Instruments, 86 (3), 035001, 2015.
• “Quantitative Study of Protein-Protein Interaction by Quartz Nanopipettes” Purushottam Babu Tiwari, Luisana Astudillo, Jaroslava Miksovska, Xuewen Wang, Wenzhi Li, Yesim Darici and Jin He, Nanoscale, 6, 10255-10263, 2014.
• “A surface plasmon resonance study of the intermolecular interaction between Esherichia colitopoisomerase I and pBAD/Thio supercoiled plasmid DNA”. PurushottamBabu Tiwari, Thirunavukkarasu Annamalai, Bokun Cheng, Gagandeep Narula, Xuewen Wang, Yuk-Ching Tse-Dinh, Jin He, and Yesim Darici, Biochemical and Biophysical Research Communications, 445 (2), 445-450, 2014.
• “Surface modification of graphene nanopores for protein translocation”. Y P Shan, P B Tiwari, P Krishnakumar, I Vlassiouk, W Z Li, X W Wang, Y Darici, S M Lindsay, H D Wang, S Smirnov, and J He, Nanotechnology, 24 (49), 495102, 2013.
• “Mass transport through vertically aligned large diameter MWCNTs embedded in parylene”. P Krishnakumar, P B Tiwari, S Staples, T Luo, Y Darici, J He & S M Lindsay. Nanotechnology 23 (45) 455101, 2012.
• “Energetics of the dipole flip-flop motion in a ferroelectric polymer chain” Lei Cai, Xuewen Wang, Yesim Darici, P.A. Dowben, and Jiandi Zhang, J. of Chem. Phys. Vol.126 (12), 124908, Mar. 28, 2007.
• "Application of a high resolution SPR technique for monitoring real-time metal/dielectric interactions" Neil M. Mulchan, Melvin Rodriguez, Kevin O' Shea and Yesim Darici, Sensors and Actuators B 88, 132-137, 2003.
• “Compensation Origins in II-VI CZT Materials” A. Zumbiehl, S. Mergui, M. Ayoub, M Hage-Ali, Zerrai, K. Cherkaoui, G. Marrakchi, Y. Darici, Journal of Materials Science and Engineering, vol. B71, pp297-300, 2000.
• “Self -assembly of Aromatic Thiols on Au (111)” Q. Jin, J. A. Rodriguez, C. Z. Li, Y. Darici and N.J. Tao. Vol 425, pp. 101-111, Surface Science, 1999.
• "Electron Beam Dissociation of CO and CO2 on ZnS Thin Films" Y. Darici, P.H. Holloway, J. Sebastian, T. Trottier, S. Jones and J. Rodriguez, J. Vac. Sci. Technol. A 17 (3) May/June 1999.
• "Structural Studies of Sulfur-Passivated GaAs(100) Surfaces with LEED and AFM", S. Milano, Y. Ke, N. Tao, X. Wang, and Y. Darici, Vol 1-2, pp 29-36, 30 Sept. 1998 Surface Science, 1998.
• "Temperature Studies of Sulfur Passivated GaAs(100) Contacts", D. Wu, L. Liu, J. Marcano, P. Nichols, S. Mergui and Y. Darici, Material Science and Engineering B. Solid State Materials for Advanced Technology 46 (61), 1997.
• "User Friendly Digital Image Processing System for Low Energy Electron Diffraction Applications", W. Subbarao, F. Wu and Y. Darici, IEEE Southeastcon '93, 8 pages, April, 1993.
• "Surface Passivation of GaAs with P2S5 - Containing Solutions", Yun Wang, Yesim Darici and Paul H. Holloway, Journal of Applied Physics, 71 (6) 15 March, 1992.
• "LEED Study of Fe Epitaxially Grown at 190oC on Cu(100)", Y. Darici, H. Min, J. Marcano and P. A. Montano, Surface Science 217, 521-528, 1989.
• "LEED Study of 1 Monolayer Fe Deposited on Cu(110)", J. Marcano, Y. Darici, H. Min and P. A. Montano, Surface Science 217, 1-12, 1989.
• "Electric Field Effects on Excitons and Shallow Donor Impurities", Y. Darici, T. Wolfram, H. R. Chandrasekhar and D. Cowan, Physical Review B, Vol.38, 14, 9686-9693, 1988.
• "LEED Measurements of one monolayer of Iron Epitaxially Grown on Cu(111)", Y. Darici, J. Marcano, H. Min and P. A. Montano, Surface Science 195, 566-578, 1988.
• "Two Magnetically-Different Closely Lying States of fcc Iron Grown on Copper (100)", P. A. Montano, G. W. Fernando, B. R. Cooper, E. R. Moog, H. M. Naik, S. D. Badar, Y. C. Lee, Y. N. Darici, H. Min, and J. Marcano, Physical Review Letters, 59, 1041, 1987.
• "LEED Measurements of Fe Epitaxially Grown on Cu(100)", Y. Darici, J. Marcano, H. Min and P. A. Montano, Surface Science 182, 477-488, 1987.

PHYSICS PROCEEDINGS

• “Superconducting Yba2Cu3Ox on (100) GaAs with MgO Buffer Layers”, Yu. Vlasov, R. Soto, J. Rodriguez, S. Merqui, Y. Darici, and G. L. Larkins Jr. Digest of INTERMAG’97, IEEE, p.HD-05, 1997.

• Photoluminescence from a VCSEL structure a-SiNx:H microcavity” A. Serpenguzel, Y. Darici., Quantum Electronics and Laser Science Conference, QELS, IEEE, Technical Digest, pages 254-255, 1999.

• ”Photoluminescence from a VCSEL structure a-SiNx:H microcavity” A. Serpenguzel, Y. Darici., Lasers and Electro-Optics, CLEO, IEEE, pages 527-528, 1999.

PHYSICS PRESENTED PAPERS, LECTURES, POSTERS and ABSTRACTS

• “Molecular interaction between Escherichia coli topoisomerase I and pBAD/Thio supercoiled plasmid DNA” (Biophysical Society meeting, Baltimore, MD (February 7-11, 2015)

• “Electrochemical impedance spectroscopy for graphene surface modification and protein translocation through the chemically modified graphene nanopore.” (American Physical Society March meeting, Denver, CO, March 3-7, 2014)

• “Quartz nanopipettes for the study of protein-protein interaction “ (Poster presentation, Biophysical Society meeting, San Francisco, CA, February 15-19, 2014)

• “Conical nanopore: A platform for sensing protein-protein molecular interaction”. (Oral presentation, Nanoflorida conference, Gainesville, FL, September 29-30, 2013)

• “Electric field controlled small molecule transport through vertically aligned large diameter multiwalled carbon nanotube forest membrane”, Purushottam Tiwari, Padmini Krishnakumar, Yesim Darici & Jin He, American Physical Society March Meeting, Baltimore, MD, March 18-22 (2013).

• “Study of Ca2+ and Mg2+ binding to DREAM protein using SPR”. (Joint annual meeting of NHBP and NHSP, Austin, TX, September 21-24, 2011)

• “SPR Study of Conformational Changes of protein-DNA Complexes” Yesim Darici, Xuewen Wang, Kalai Mathee, Meijin Shi, Angel Freixas, ChinaNANO 2007, International Conference on Nanoscience and Technology. June 4-6, Beijing China, 2007.

• “The energetics of the dipole flip-flop motion in a ferroelectric polymer chain” Lei Cai, Xuewen Wang, Yesim Darici, P.A. Dowben, and Jiandi Zhang, ChinaNANO 2007 International Conference on Nanoscience and Technology. June 4-6, Beijing China, 2007.

• “Surface/Interface Studies on Chiral Molecules self-assembled on Au(111)” Yesim Darici, Neil Mulchan, American Association of Physics Teachers, AAPT National Meeting in Miami, FL, 2004.

• “Compensation Origins in II-VI CZT Materials” A. Zumbiehl, S. Mergui, M. Ayoub, M Hage-Ali, Zerrai, K. Cherkaoui, G. Marrakchi, Y. Darici, presented at the E-MRS in Strasbourg, France, June 3, 1999.

• “Yba2Cu3O7 on ZrO2 Buffered (100) Si Processing and Characterization”, J. Rodriguez, Y. Darici, A. Lacambra and G.L. Larkins, Applied Superconductivity Conference, California (1998)

• "Atomic Structure of Sulfur on GaAs (100) with LEED and AFM", S. Milano, Y. Ke, N. Tao, X. Wang, and Y. Darici, AVS Meeting, Orlando, Florida, February, 1997.

• "Electron Beam Dissociation of CO and CO2 on Zinc Sulfide Thin Films", Y. Darici and S. Milano, AVS Meeting, Orlando, Florida, February, 1997.

• “Superconducting Yba2Cu3Ox on (100) GaAs with MgO Buffer Layers”, Yu. Vlasov, R. Soto, J. Rodriguez, S. Merqui, Y Darici, and G.L. Larkins Jr. IEEE, 1997.

• "Temperature Studies of Sulfur Passivated GaAs (100) Contacts", D. Wu, L. Liu, J. Marcano, P. Nichols, S. Mergui, and Y. Darici, E-MRS Spring Meeting, Strasbourg, France, June 4, 1996.

• "Study of Sulfur Bonding on Gallium Arsenide (100) Surfaces Using Supercritical Fluid Extraction", P. Cabauy, Y. Darici and K.G. Furton, ACS Annual Meeting, California, March, 1995.

• "The Use of High Temperature Supercritical Fluid Extraction to Study Sulfur Bonding on Gallium Arsenide Semiconductor Surfaces" P. Cabauy, Y. Darici and K.G. Furton, ACS Annual Meeting of the Florida Sections, May, 1995.

• "Thermal Desorption of Sulfur from GaAs Surfaces", Y. Darici, D. Wu, J. Marcano, G. Fisher, and P.H. Holloway, 39th Annual AVS Symposium and Topical Conferences, Chicago, IL, Nov., 1992.

• "Sulfur Passivation of GaAs Surfaces", Y. Wang, Y. Darici, and P. H. Holloway, Second International Meeting on Advanced Processing and Characterization Technologies, Clearwater, FL, May, 1991.

• "Sulfur Passivation of GaAs Surfaces", Y. Wang, P. H. Holloway, and Y. Darici, 37th Annual AVS Symposium and Topical Conferences, Nov., 1991.

• "Passivation of GaAs (100) Surfaces", Y. Darici, W. Leung, Y. Wang, and P. H. Holloway, American Physical Society, Anaheim, CA, March, 1990.

• "Analysis of P2S5/NH4OH Passivated GaAs Surfaces", Y. Wang, Y. Darici, and P. H. Holloway, Seventeenth Annual Conference Physics and Chemistry of Semiconductor Interfaces, Clearwater, May, 1990.

• "Passivation of GaAs(100) Surfaces", Y. Wang, Y. Darici, and P.H. Holloway, Seventeenth Annual Conference Physics and Chemistry of Semiconductor Interfaces, Clearwater, May, 1990.

• "LEED Measurements on Fe Epitaxially Grown on Cu (100) at 1900C", Y. N. Darici, H. Min, J. M. Marcano, and P. A. Montano, American Physical Society, New Orleans, March, 1988.

• "LEED Measurements of Iron Epitaxially Grown on Cu (110)", J. Marcano, H. Min, Y. Darici, and P. A. Montano, American Physical Society, New Orleans, March, 1988.

• "LEED Measurements of Iron Epitaxially Grown on Cu (111)" Y. Darici, J. Marcano, H. Min, and P. A. Montano, American Physical Society, New York, March, 1987.

• "LEED Measurements of Iron Epitaxially Grown on Cu (100)" Y. Darici, J. Marcano, H. Min, and P. A. Montano, American Physical Society, Las Vegas, March, 1986.

• "Electric Field Effects on Shallow Donor Impurities and Excitons" Y. Darici, American Physical Society, Baltimore, March, 1985.